Simple sequence analysis

This code finds mirrors into a sequence string. It takes as parameter one start and one end.


Sample code : 


public function sequenceanalysis(SequenceInterface $sequenceManager)
{
    $oSequence = new Sequence();
    $oSequence->setSequence("AGGGAATTAAGTAAATGGTAGTGG");
    $sequenceManager->setSequence($oSequence);
 
    $aMirrors = $sequenceManager->findMirror(null, 6, 8, "E");
 
    return $this->render('default/sequenceanalysis.html.twig',
        array('mirrors' => $aMirrors)
    );
}

Result :

  • 6
    • 0
      • 0 : "AATTAA"
      • 1 : 4
    • 1
      • 0 : "ATGGTA"
      • 1 : 14
  • 8
    • 0
      • 0 : "GAATTAAG"
      • 1 : 3